Teng Lab

Selected Publications

† Equal contribution; $ Corresponding authors. Full publication list at Google Scholar | PubMed

Research Papers

  • Murray-Nerger LA, Maestri D†, Liu X†, Li Z†, …, Tempera I, Teng M, Gewurz BE. (2024)
    The DNA loop release factor WAPL suppresses Epstein-Barr virus latent membrane protein expression to maintain the highly restricted latency I program.
    PubMed | PLoS Pathogens

  • Liu X, Gillis N, Jiang C, …, Wan L, Duckett DR, Teng M. (2024)
    An epigenomic fingerprint of human cancers by landscape interrogation of super enhancers at the constituent level.
    PubMed | PLoS Computational Biology

  • Mammadova J, Colin-Leitzinger C, Nguyen D, …, Teng M, Ismail-Khan R, Gillis N. (2023)
    Clonal Hematopoiesis as a Molecular Risk Factor for Doxorubicin-Induced Cardiotoxicity: A Proof-of-Concept Study.
    PubMed | JCO Precision Oncology

  • Wang C†, Liu X†, Liang J†, Narita Y†, Ding W†, …, Jiang S$, Teng M$, Zhao B$. (2023)
    A DNA tumor virus globally reprograms host 3D genome architecture to achieve immortal growth.
    PubMed | Nature Communications |

  • Jiang C, Ward NP, Prieto-Farigua N, Kang YP, Thalakola A, Teng M, DeNicola GM. (2022)
    A CRISPR screen identifies redox vulnerabilities for KEAP1/NRF2 mutant non-small cell lung cancer.
    PubMed | Redox Biology

  • Liu X, Zhao B, Shaw TI, Fridley BL, Duckett DR, Tan AC, Teng M. (2022)
    Summarizing internal dynamics boosts differential analysis and functional interpretation of super enhancers.
    PubMed | Nucleic Acids Research |

  • Teng M$, Du D, Chen D, Irizarry RA. (2021)
    Characterizing batch effects and binding site-specific variability in ChIP-seq data.
    PubMed | NAR Genomics and Bioinformatics

  • Wang C†, Zhang L†, Ke L, …, Kaye KM, Teng M$, Zhao B$. (2020)
    Primary effusion lymphoma enhancer connectome links super-enhancers to dependency factors.
    PubMed | Nature Communications

  • Vena F†, Bayle S†, Nieto A, …, Roush WR, Teng M, Duckett D. (2020)
    Targeting Casein Kinase 1 Delta Sensitizes Pancreatic and Bladder Cancer Cells to Gemcitabine Treatment by Upregulating Deoxycytidine Kinase.
    PubMed | Molecular Cancer Therapeutics

  • Guo R†, Jiang C†, Zhang Y, …, Doench JG, Teng M$, Gewurz BE$. (2020)
    MYC controls the Epstein-Barr Virus lytic switch.
    PubMed | Molecular Cell
    (Highlighted in Cancer Discovery and Science Signaling)

  • The ENCODE Project Consortium. (2020)
    Expanded encyclopaedias of DNA elements in the human and mouse genomes.
    PubMed | Nature

  • Wang C, Li D, Zhang L, …, Gewurz BE, Teng M$, Zhao B$. (2019)
    RNA sequencing analyses of gene expression during Epstein-Barr Virus infection of primary B lymphocytes.
    PubMed | Journal of Virology

  • Hicks SC, Townes FW, Teng M, Irizarry RA. (2018)
    Missing data and technical variability in single-cell RNA-sequencing experiments.
    PubMed | Biostatistics

  • Teng M, Irizarry RA. (2017)
    Accounting for GC-content bias reduces systematic errors and batch effects in ChIP-seq data.
    PubMed | Genome Research

  • Teng M, Love MI, Davis CA, …, Wei X, Zhan L, Irizarry RA. (2016)
    A benchmark for RNA-seq quantification pipelines.
    PubMed | Genome Biology
    (Highlighted in Nature Reviews Genetics)

  • Juan L, Teng M, Zang T, …, Li J, Zhang T, Wang Y. (2014)
    The personal genome browser: visualizing functions of genetic variants.
    PubMed | Nucleic Acids Research

  • Teng M†, Ichikawa S†, Padgett LR, …, Edenberg HJ, Econs MJ, Liu Y. (2012)
    regSNPs: a strategy for prioritizing regulatory single nucleotide substitutions.
    PubMed | Bioinformatics


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